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Datasets (4)

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  • KEYWORDS SARS-CoV-2
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SARS-CoV-2 sgRNA in silico dataset

We generated 25 high-control synthetic Illumina paired-end sequencing datasets to systematically assess the performance of sgRNA detection pipelines (LeTRS, Periscope, sgDI-tector, sgRNAdetect) under realistic but controlled conditions.The collection comprises...

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COVID-19 news monitoring with Medical Information System (Medisys)

Dataset of metadata created with Europe Media Monitor (EMM)/Medical Information System (MediSys) processing chain from news articles. MEDISYS is a media monitoring system providing event-based surveillance to rapidly identify potential public health threats u...

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AMPLICON dataset from 9 SARS-CoV-2 representative sequences

This dataset comprises > 100 paired-end whole genome sequencing (WGS) data generated from nine representative SARS-CoV-2 sequences (IDs: LR991699,MW617687,MW763128,MW972888,OD913776,OM873778,OM898676,OU015160,OV754178) obtained from the COVID-19 data portal (h...

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Wastewater in-silico NGS dataset

This dataset comprises 45 paired-end wastewater next-generation sequencing (NGS) samples generated in-silico using the SWAMPY tool (https://doi.org/10.1093/bioinformatics/btae532). In particular, we produced 500000 reads per sample (--n_reads 500000) to simula...

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